Researcher in Bioinformatics/Computational Biology

Stockholm University Department of Environmental Science

Researcher in Bioinformatics/Computational Biology Stockholm

Ref. No. SU FV-2458-21

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at the Department of Environmental Science. Closing date: 22 August 2021.

SciLifeLab is a national research center for molecular biosciences  located at Karolinska Institutet’s campus in Solna. SciLifeLab provides infrastructure for state-of-the-art high-throughput molecular technologies and serves as a collaboration hub for Stockholm University, Karolinska Institute, KTH Royal Institute of Technology, and Uppsala University. The center brings together a broad range of scientists across traditional university and department boundaries, to facilitate networking and multidisciplinary studies within two main focus areas: health and environmental research.

Stockholm University consistently ranks among the top universities in the world in Environmental Science. The Department of Environmental Science is a multidisciplinary department that gathers about 200 faculty, researchers, doctoral students and support staff scientists, from diverse fields in the natural sciences, and over 30 countries, to study various environmental phenomena.

Project description

Evidence show that exposure to air pollution or the hundreds of thousands chemicals that contaminate our environment are main risk factors for many human diseases. There has been a rapidly increasing interest in whether environmental factors modulate the establishment and maintenance of epigenetic modifications, and thereby affect gene expression and phenotype. We combine experimental model systems, omics tools, and molecular epidemiological research to study gene-environment interactions and epigenetic basis of disease.

We seek a researcher with strong skills in epigenetics and bioinformatics/computational biology. This position involves work with cell, animal and human data to study mechanisms and health risks linked to environmental factors such as environmental pollution. You will work, as part of a larger team, in the ERC-funded project PATER, with a focus on increasing understanding of paternal epigenetic inheritiance.

Main responsibilities

The researcher will work in Associate Professor Oskar Karlsson's research group at SciLifeLab in Solna. The main task is to analyze molecular data (e.g. epigenome, transcriptome, proteome), in close collaboration with other people in the group. The employed candidate is expected to handle and analyze data, as well as interpret and communicate results.

Qualification requirements

Researchers are appointed primarily for purposes of research and must hold a Swedish doctoral degree or an equivalent degree from another country.

Assessment criteria

In the appointment process, special attention will be given to research skills in bioinformatics/computational biology. We are looking for a thorough person with an eye for detail, initiative and a sense of responsibility, as well as a good ability for both independent and group work.

Most valuable experiences:

  • Experience in a research environment (e.g. PhD) or other relevant work with a focus on bioinformatics.
  • Experience with analyzing data in R or Phyton.
  • Experience in analyzing and evaluating data from e.g. RNA-sequencing, RRBS, WGBS, proteomics
  • Excellent programming skills in e.g. R or Python.
  • Very good oral and written proficiency in English.

Desirable/merited skills:

  • Experience with the use of computer clusters and machine learning
  • Experience of working with UNIX, Perl, or other relevant environments
  • Knowledge/interest in biomedical research, toxicology and the link between the environment and health
  • Experience of method development within bioinformatics
  • Experience with advanced image analysis

Terms of employment

 The position involves full-time employment for a maximum of two years, with the possibility of extension under special circumstances. Start date is suggested as September 2021, but is flexible.

Stockholm University strives to be a workplace free from discrimination and with equal opportunities for all.

Contact

Further information about the position can be obtained from Associate Professor Oskar Karlsson, oskar.karlsson@aces.su.se.

Union representatives

Ingrid Lander (Saco-S), telephone: +46 708 16 26 64, saco@saco.su.se, Alejandra Pizarro Carrasco (Fackförbundet ST/Lärarförbundet), telephone: +46 8 16 34 89, alejandra@st.su.se, and seko@seko.su.se (SEKO).

Application

Apply for the position at Stockholm University's recruitment system. It is the responsibility of the applicant to ensure that the application is complete in accordance with the instructions in the job advertisement, and that it is submitted before the deadline.

Please include the following information with your application

  • Your contact details and personal data
  • Your highest degree
  • Your language skills
  • Contact details for 2–3 references

and, in addition, please include the following documents

  • Cover letter
  • CV – degrees and other completed courses, work experience and a list of publications
  • Copy of PhD diploma
  • Research proposal (no more than 2 pages) describing:
    – why you are interested in the position described in the advertisement
    – to make advancements in this field, what studies or experiments would you do, and how would you do them?
    – what are your strenghts in bioinformatics/computational biology and what makes you most suitable for the project in question?
  • Publications in support of your application (no more than 3 files).
  • Letters of recommendation (no more than 3 files)

The instructions for applicants are available at: How to apply for a position.

You are welcome to apply!

Stockholm University contributes to the development of sustainable democratic society through knowledge, enlightenment and the pursuit of truth.

Closing date: 22/08/2021

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